Contents

Last modified: 2021-11-23 19:31:49
Compiled: 2021-11-23 19:32:02

Currently, rMiW is a R package distributed in kumeS’s GitHub site.

1 Getting started

  1. Start R.app

  2. Enter the following commands in the R console .

#Check for the installation (30 June 2021)

#Install
install.packages( "devtools" , repos="http://cran.r-project.org")
devtools::install_github( "kumeS/rMiW", force = TRUE )

#Load
library(rMiW)

#if you want to remove the package
#remove.packages("rMiW", lib=.libPaths())

In addition, you also need to install an ExperimentHub package from Bioconductor.

#Check for the installation (30 June 2021)
#install.packages("BiocManager")

#Install
BiocManager::install("ExperimentHub", force = TRUE)

#Load
library(ExperimentHub)

2 Optional proxy setting

Run the following commands in the R console.

#Proxy URL
proxy_url = "http://XXXX"

#Proxy setting
Sys.setenv("http_proxy" = proxy_url)
Sys.setenv("https_proxy" = proxy_url)
Sys.setenv("ftp_proxy" = proxy_url)

Session information

## R version 4.1.1 (2021-08-10)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Catalina 10.15.7
## 
## Matrix products: default
## BLAS:   /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
## 
## locale:
## [1] ja_JP.UTF-8/ja_JP.UTF-8/ja_JP.UTF-8/C/ja_JP.UTF-8/ja_JP.UTF-8
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] BiocStyle_2.22.0
## 
## loaded via a namespace (and not attached):
##  [1] bookdown_0.24       digest_0.6.28       R6_2.5.1           
##  [4] jsonlite_1.7.2      magrittr_2.0.1      evaluate_0.14      
##  [7] stringi_1.7.5       rlang_0.4.12        jquerylib_0.1.4    
## [10] bslib_0.3.1         rmarkdown_2.11      tools_4.1.1        
## [13] stringr_1.4.0       xfun_0.28           yaml_2.2.1         
## [16] fastmap_1.1.0       compiler_4.1.1      BiocManager_1.30.16
## [19] htmltools_0.5.2     knitr_1.36          sass_0.4.0