agGraphSearch, knitr, SPARQL
Last modified: 2021-10-11 14:34:40
Compiled: Mon Oct 11 14:40:17 2021
To install agGraphSearch, start R and enter:
install.packages( "devtools" )
devtools::install_github( "kumeS/agGraphSearch" )
Once agGraphSearch is installed, it can be loaded by the following command.
library("agGraphSearch")
Optionally, you use the following sh command on Mac/Linux Terminal if you want to use the Rocker environment.
docker run \
-d \
--name RStudio \
-v $(pwd)/XXX:/home/rstudio/XXX \
-e ROOT=TRUE \
-e PASSWORD=PassWord \
-p 8787:8787 \
rocker/rstudio:4.0.5
#XXX: Your folder path
#Then, browse the page
open http://localhost:8787
An alternative way, type the R code below if you want to run the Rocker environment from the R console.
system("docker run \\
-d \\
--name RStudio \\
-v $(pwd)/XXX:/home/rstudio/XXX \\
-e ROOT=TRUE \\
-e PASSWORD=PassWord \\
-p 8787:8787 \\
rocker/rstudio:4.0.5")
#XXX: Your folder path
#Then, browse the page
system("open http://localhost:8787")
See Rocker page if you want to know details to the rocker image.
Type the R code below for the settings.
## run first on the terminal windows
#sudo apt-get update
#sudo apt-get install libxml2-dev libglpk-dev
#Install packages
install.packages("BiocManager")
BiocManager::install("BiocStyle")
install.packages( "devtools" )
devtools::install_github( "kumeS/agGraphSearch" )
library( "agGraphSearch" )
## R version 4.1.0 (2021-05-18)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Catalina 10.15.7
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
##
## locale:
## [1] ja_JP.UTF-8/ja_JP.UTF-8/ja_JP.UTF-8/C/ja_JP.UTF-8/ja_JP.UTF-8
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] BiocStyle_2.20.2
##
## loaded via a namespace (and not attached):
## [1] bookdown_0.24 digest_0.6.27 R6_2.5.1
## [4] jsonlite_1.7.2 magrittr_2.0.1 evaluate_0.14
## [7] stringi_1.7.4 rlang_0.4.11 jquerylib_0.1.4
## [10] bslib_0.3.0 rmarkdown_2.11 tools_4.1.0
## [13] stringr_1.4.0 xfun_0.26 yaml_2.2.1
## [16] fastmap_1.1.0 compiler_4.1.0 BiocManager_1.30.16
## [19] htmltools_0.5.2 knitr_1.34 sass_0.4.0